Next you set up a GPO that enrolls and distributes machine certs that your internal CA issues.

Follow the Add a Role Prompts on Server 2008 or 2012. You start by setting up a PKI environment, which involves setting up certificate services on a machine in your environment, which will become your Enterprise Root CA. It has been four years since I set up our RADIUS+WPA2 PEAP TLS environment and I'm not at work right now but the basic gist is this (please correct me hive mind if I miss a step).